species:   Bodot
pid:       PID1097
parent:    Bd-milR46
paralog:   
locus:     SACU01000010.1:1237884-1238021
matures:   ['AAGGUCUGAACCCUGUGGUU', 'CCACACCAGGGGUCGAACCUGGA']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000010.1:1237884-1238021

0 out of bounds
24 alignments
21 proper strand
18 stranded perfect matches

          *************************                                                                       **********************          
AAAAAGAUGUGACCACACCAGGGGUCGAACCUGGAAUCUCUUGAUUCGUAGUCAAGCGCCUUGCCAUUGGGCCAUGCGGCCAGUGGGUACUGGAUGUUGUUGCCAACCAAGGUCUGAACCCUGUGGUUGCUGAGGAAG
........(((((((((...(((.(((.((((.(((((....)))))((((.(((...((.((((....((((....))))....))))..))...)))))))......)))).))).))))))))))))........
------------------------------------------------------------------------------------------------------------AAGGUCUGAACCCUGUGGUU---------- l=20 a=13 c
------------CCACACCAGGGGUCGAACCUGGA------------------------------------------------------------------------------------------------------- l=23 a=0 c*
------------------------------------------------------------------------------------------------------------AAGGUCUGAACCCUGUGGUU---------- l=20 a=13 ma
------------CCACACCAGGGGUCGAACCUGGA------------------------------------------------------------------------------------------------------- l=23 a=0 ma*

------------------------------------------------------------------------------------------------------------AAGGUCUGAACCCUGUGGUU---------- l=20 a=13 (c,ma)
------------------------------------------------------------------------------------------------------------AAGGUCUGAACCCUGUGGUc---------- l=20 a=2 
------------------------------------------------------------------------------------------------------------AAGGUCUGAACCCUGUGGUg---------- l=20 a=1 
------------------------------------------------------------------------------------------------------------AAGGUCUGAACCCUGUGGUUG--------- l=21 a=3 
-------------------------------------------------------------------------------------------------------------AGGUCUGAACCCUGUGGUUG--------- l=20 a=2 

mb-01011
ax-1001111
ku-01
ss-111111101110
fn-111
